Patrick Kiel An Open Lab Notebook


Thank you for opening my open lab notebook!

In this open lab notebook, I seek to commit to open science through my data, methodology, and analyses. Inspired by Holly Putnam, I want this notebook to serve as an open-access repository of my thoughts and ideas. Notebook entries will outline the analysis I am conducting and link to resources, data, and Github repositories.

I hope this notebook not only documents and improves my own work, but advances the capabilities and knowledge of our scientific community. The layout of the notebook will be simple; each entry will be categorized and dated to facilitate archiving. This will allow easy jumping from related post to related post - effectively tracking my progress through time and topic. To access these archives, click the sidebar on the left and select which archive you'd like to view. My goal is to ensure this notebook allows myself and others following along to easily connect the threads of my work.

Notebook Entries

AcDC Composite Growth Index

Growth of the staghorn coral is measured in many different ways. Here I propose a composite indexing methodology to align disparate measurements to deduce genotype-specific influences on growth. Open Notebook Entry →

Password Protected Posts

Follow this guide to build password protected posts for GitHub Pages hosted Jekyll blogs using this simple Javascript code. Open Notebook Entry →

Publishing RMarkdown Reports with Jekyll

By combining the power of RMarkdown reports, Github Pages, and Jekyll, you can easily share in-depth data analyses with your team. Follow this guide to deploy RMarkdown reports in your Open Notebook. Open Notebook Entry →